STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1778KEGG: dol:Dole_1883 6-phosphogluconate dehydrogenase NAD-binding; IMG reference gene:2503007489; PFAM: Domain of unknown function (DUF2520); Rossmann-like domain. (290 aa)    
Predicted Functional Partners:
Dalk_1777
KEGG: gme:Gmet_1642 ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; IMG reference gene:2503007488; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase.
 
  
 0.958
Dalk_3254
KEGG: dol:Dole_0042 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; IMG reference gene:2503008984; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain.
  
 0.923
Dalk_1779
PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_2330 methylenetetrahydrofolate reductase (NAD(P)H); IMG reference gene:2503007490; PFAM: Methylenetetrahydrofolate reductase.
       0.527
Dalk_1776
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ppd:Ppro_1969 molybdopterin biosynthesis MoaE; IMG reference gene:2503007487; PFAM: MoaE protein.
       0.525
Dalk_4408
KEGG: dol:Dole_1592 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; IMG reference gene:2503010156; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic.
 
     0.421
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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