STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1817Putative uncharacterized periplasmic protein; KEGG: sus:Acid_4316 hypothetical protein; IMG reference gene:2503007529. (544 aa)    
Predicted Functional Partners:
Dalk_1816
KEGG: dde:Dde_0659 Fis family transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: AAA ATPase; IMG reference gene:2503007528; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box.
       0.434
Dalk_1818
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dvu:DVU0535 hmc operon protein 2; IMG reference gene:2503007530; PFAM: 4Fe-4S binding domain.
       0.427
Dalk_1819
NrfD family membrane protein; PFAM: Polysulphide reductase NrfD; KEGG: sus:Acid_4205 polysulphide reductase, NrfD; IMG reference gene:2503007531; PFAM: Polysulphide reductase, NrfD.
       0.427
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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