STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1898TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: dol:Dole_0725 ribosomal protein S5; IMG reference gene:2503007610; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type. (167 aa)    
Predicted Functional Partners:
Dalk_0918
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; IMG reference gene:2503006619; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18.
  
 0.999
Dalk_0919
PFAM: ribosomal protein S6; KEGG: dol:Dole_0010 ribosomal protein S6; IMG reference gene:2503006620; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6.
   
 0.999
Dalk_0933
TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: sfu:Sfum_2118 ribosomal protein S1; IMG reference gene:2503006634; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
  
 0.999
Dalk_1890
PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: gsu:GSU2832 30S ribosomal protein S4; IMG reference gene:2503007602; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type.
 
 0.999
Dalk_1891
PFAM: ribosomal protein S11; KEGG: gme:Gmet_0651 30S ribosomal protein S11; IMG reference gene:2503007603; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11.
 0.999
Dalk_1892
PFAM: ribosomal protein S13; KEGG: dol:Dole_0730 ribosomal protein S13; IMG reference gene:2503007604; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13.
 
 0.999
Dalk_1893
KEGG: dol:Dole_0729 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; IMG reference gene:2503007605; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1.
 
 0.999
Dalk_1894
TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sat:SYN_01596 methionine aminopeptidase; IMG reference gene:2503007606; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I.
 
 
 0.999
Dalk_1895
TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dol:Dole_0728 preprotein translocase, SecY subunit; IMG reference gene:2503007607; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit.
 0.999
Dalk_1896
PFAM: ribosomal protein L15; KEGG: dol:Dole_0727 ribosomal protein L15; IMG reference gene:2503007608; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle.
 0.999
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.