STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1920KEGG: dol:Dole_0703 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; IMG reference gene:2503007632; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; PPIC-type PPIASE domain; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, [...] (1492 aa)    
Predicted Functional Partners:
Dalk_1889
KEGG: dol:Dole_0733 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; IMG reference gene:2503007601; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type.
 
 0.999
Dalk_1921
TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase beta subunit; KEGG: dol:Dole_0702 DNA-directed RNA polymerase, beta subunit; IMG reference gene:2503007633; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta [...]
 0.999
Dalk_1918
Ribosomal protein S7; Binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; IMG reference gene:2503007630; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle.
 
 
 0.998
Dalk_1238
TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: dol:Dole_2222 DNA-directed RNA polymerase, omega subunit; IMG reference gene:2503006941; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
  
 0.997
Dalk_3165
PFAM: ribosomal protein S2; KEGG: dol:Dole_0474 ribosomal protein S2; IMG reference gene:2503008894; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type.
 0.997
Dalk_4737
NusA antitermination factor; Modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; IMG reference gene:2503010494; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA; transcription termination factor NusA, C-terminal duplication.
 
 0.997
Dalk_1898
TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: dol:Dole_0725 ribosomal protein S5; IMG reference gene:2503007610; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type.
 
 
 0.996
Dalk_1909
KEGG: dol:Dole_0714 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; IMG reference gene:2503007621; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type.
 
 
 0.996
Dalk_1910
TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dol:Dole_0713 ribosomal protein L22; IMG reference gene:2503007622; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type.
  
 
 0.996
Dalk_1922
TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dol:Dole_0701 ribosomal protein L7/L12; IMG reference gene:2503007634; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12.
 
 0.996
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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