Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_1925PFAM: ribosomal protein L11; KEGG: dde:Dde_2992 50S ribosomal protein L11; IMG reference gene:2503007637; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11. (140 aa)    
Predicted Functional Partners:
Dalk_1922
TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dol:Dole_0701 ribosomal protein L7/L12; IMG reference gene:2503007634; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12.
 
 0.999
Dalk_1924
PFAM: ribosomal protein L1; KEGG: dol:Dole_0699 ribosomal protein L1; IMG reference gene:2503007636; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast.
 0.999
Dalk_1926
NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: dol:Dole_0697 NusG antitermination factor; IMG reference gene:2503007638; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG.
 
 0.999
Dalk_1923
PFAM: ribosomal protein L10; KEGG: sfu:Sfum_1547 ribosomal protein L10; IMG reference gene:2503007635; PFAM: Ribosomal protein L10.
 
 0.998
Dalk_1915
PFAM: ribosomal protein L3; KEGG: dol:Dole_0708 ribosomal protein L3; IMG reference gene:2503007627; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial.
 
 0.997
Dalk_1921
TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase beta subunit; KEGG: dol:Dole_0702 DNA-directed RNA polymerase, beta subunit; IMG reference gene:2503007633; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta [...]
 
 0.997
Dalk_1899
TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: chy:CHY_2293 50S ribosomal protein L18; IMG reference gene:2503007611; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type.
 
 0.996
Dalk_1900
TIGRFAM: ribosomal protein L6 signature 1; PFAM: ribosomal protein L6; KEGG: dol:Dole_0723 ribosomal protein L6; IMG reference gene:2503007612; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type.
 
 0.996
Dalk_1905
TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dol:Dole_0718 ribosomal protein L14; IMG reference gene:2503007617; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle.
 
 0.996
Dalk_1912
Ribosomal protein L2; One of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; IMG reference gene:2503007624; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar.
 
 0.996
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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