STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1925PFAM: ribosomal protein L11; KEGG: dde:Dde_2992 50S ribosomal protein L11; IMG reference gene:2503007637; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11. (140 aa)    
Predicted Functional Partners:
Dalk_1899
TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: chy:CHY_2293 50S ribosomal protein L18; IMG reference gene:2503007611; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type.
 
 0.999
Dalk_1904
TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: dol:Dole_0719 ribosomal protein L24; IMG reference gene:2503007616; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle.
  
 0.999
Dalk_1905
TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dol:Dole_0718 ribosomal protein L14; IMG reference gene:2503007617; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle.
 
 0.999
Dalk_1910
TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: dol:Dole_0713 ribosomal protein L22; IMG reference gene:2503007622; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type.
  
 0.999
Dalk_1915
PFAM: ribosomal protein L3; KEGG: dol:Dole_0708 ribosomal protein L3; IMG reference gene:2503007627; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial.
 
 0.999
Dalk_1921
TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase beta subunit; KEGG: dol:Dole_0702 DNA-directed RNA polymerase, beta subunit; IMG reference gene:2503007633; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta [...]
 
 0.999
Dalk_1922
TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dol:Dole_0701 ribosomal protein L7/L12; IMG reference gene:2503007634; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12.
 
 0.999
Dalk_1924
PFAM: ribosomal protein L1; KEGG: dol:Dole_0699 ribosomal protein L1; IMG reference gene:2503007636; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast.
 
 0.999
Dalk_1926
NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: dol:Dole_0697 NusG antitermination factor; IMG reference gene:2503007638; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG.
 
 0.999
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
 
 0.999
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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