STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1963PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2855 TPR repeat-containing protein; IMG reference gene:2503007680; PFAM: Tetratricopeptide repeat. (233 aa)    
Predicted Functional Partners:
Dalk_2757
KEGG: dol:Dole_0669 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; IMG reference gene:2503008480; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.
  
    0.866
Dalk_1962
PFAM: PfkB domain protein; KEGG: dol:Dole_2854 ribokinase-like domain-containing protein; IMG reference gene:2503007679; PFAM: pfkB family carbohydrate kinase.
 
     0.652
Dalk_1194
KEGG: sat:SYN_02375 hypothetical protein; IMG reference gene:2503006896.
  
  
 0.642
Dalk_0911
PFAM: ParB domain protein nuclease; KEGG: dol:Dole_2368 nuclease; IMG reference gene:2503006612; PFAM: ParB-like nuclease domain.
  
     0.630
Dalk_2811
KEGG: dol:Dole_1197 hypothetical protein; IMG reference gene:2503008535.
  
     0.613
Dalk_2060
PFAM: FG-GAP repeat protein; KEGG: dol:Dole_1753 FG-GAP repeat-containing protein; IMG reference gene:2503007777.
  
    0.609
Dalk_2124
Hypothetical protein Dalk_2124; KEGG: keap1a; kelch-like ECH-associated protein 1a; IMG reference gene:2503007844.
  
    0.609
Dalk_2125
PFAM: Kelch repeat-containing protein; KEGG: NEMVEDRAFT_v1g164986; predicted protein; IMG reference gene:2503007845; PFAM: Kelch motif.
  
    0.609
Dalk_4066
Hypothetical protein Dalk_4066; KEGG: mac:MA0873 PQQ repeat-containing protein; IMG reference gene:2503009811.
  
    0.609
Dalk_5206
KEGG: dol:Dole_0378 hypothetical protein; IMG reference gene:2503010965.
  
     0.575
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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