STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1971PFAM: Aldehyde Dehydrogenase; KEGG: pmy:Pmen_4187 aldehyde dehydrogenase; IMG reference gene:2503007688; PFAM: Aldehyde dehydrogenase family. (478 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
   
 0.922
Dalk_4974
Citrate Synthase, Type II; KEGG: dol:Dole_0026 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; IMG reference gene:2503010733; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type).
  
 0.886
Dalk_1336
PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase; IMG reference gene:2503007040; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Zinc-binding dehydrogenase.
  
 0.867
Dalk_3539
PFAM: formyl transferase domain protein; KEGG: dde:Dde_1225 hypothetical protein; IMG reference gene:2503009271; PFAM: Formyl transferase.
 
   
 0.854
Dalk_2329
Acetyl-CoA synthetase (Acetate-CoA ligase); TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sfu:Sfum_0745 acetate--CoA ligase; IMG reference gene:2503008049; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase.
  
 0.853
Dalk_0518
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503006218; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
  
 0.850
Dalk_0417
Transaldolase; KEGG: dol:Dole_2486 putative transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; IMG reference gene:2503006114; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family.
  
 0.817
Dalk_3156
Succinate dehydrogenase, flavoprotein subunit A; Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; IMG reference gene:2503008885; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup.
   
 0.817
Dalk_3640
Acetyl-CoA synthetase (Acetate-CoA ligase); PFAM: AMP-dependent synthetase and ligase; KEGG: dol:Dole_1499 AMP-dependent synthetase and ligase; IMG reference gene:2503009384; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme.
  
 0.802
Dalk_3456
KEGG: ypb:YPTS_0831 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; IMG reference gene:2503009188; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region.
  
 
 0.789
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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