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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1983PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: dde:Dde_2459 ThiF protein, putative; IMG reference gene:2503007700; PFAM: MoeZ/MoeB domain; ThiF family. (284 aa)    
Predicted Functional Partners:
Dalk_1984
PFAM: thiamineS protein; KEGG: dvl:Dvul_1876 thiamineS protein; IMG reference gene:2503007701; PFAM: ThiS family.
 
 0.995
Dalk_1776
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ppd:Ppro_1969 molybdopterin biosynthesis MoaE; IMG reference gene:2503007487; PFAM: MoaE protein.
  
 0.981
Dalk_0257
PFAM: thiamineS protein; KEGG: pth:PTH_0497 sulfur transfer protein; IMG reference gene:2503005953; PFAM: ThiS family.
  
 0.973
Dalk_2649
TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sfu:Sfum_2683 aminotransferase, class V; IMG reference gene:2503008371; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS.
   
 0.937
Dalk_5220
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dol:Dole_2243 aminotransferase class V; IMG reference gene:2503010979; PFAM: Aminotransferase class-V.
   
 0.937
Dalk_2755
KEGG: pca:Pcar_2768 molybdopterin biosynthesis, protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; IMG reference gene:2503008478; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial.
 
 
 0.930
Dalk_2944
KEGG: dol:Dole_1268 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; IMG reference gene:2503008670; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase.
    
 0.827
Dalk_2393
KEGG: mla:Mlab_0276 hypothetical protein; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; IMG reference gene:2503008113; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase.
 
 
 0.826
Dalk_2648
TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sfu:Sfum_2684 Fe-S cluster assembly protein NifU; IMG reference gene:2503008370; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU.
  
 
 0.823
Dalk_0954
KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; IMG reference gene:2503006655; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase.
  
 
 0.798
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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