STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1997PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein; IMG reference gene:2503007714. (740 aa)    
Predicted Functional Partners:
Dalk_2944
KEGG: dol:Dole_1268 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; IMG reference gene:2503008670; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase.
   
 0.914
Dalk_0805
PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: chu:CHU_2338 S1 RNA-binding domain-containing protein; IMG reference gene:2503006506; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain.
    
 0.890
Dalk_3593
KEGG: ankyrin repeat protein, putative; IMG reference gene:2503009325.
  
 
  0.856
Dalk_3592
PFAM: Ankyrin; KEGG: ankyrin repeat protein, putative; IMG reference gene:2503009324; PFAM: Ankyrin repeat.
  
 
  0.851
Dalk_0766
KEGG: bph:Bphy_5540 putative DnaK-related protein (molecular chaperone); IMG reference gene:2503006467; PFAM: Hsp70 protein.
  
 0.846
Dalk_0767
KEGG: sfu:Sfum_0343 DnaK-related protein; IMG reference gene:2503006468; PFAM: DNA-K related protein; Hsp70 protein.
  
 0.846
Dalk_1138
2-alkenal reductase; PFAM: Heat shock protein 70; KEGG: cac:CAC0472 HSP70/DnaK family protein; IMG reference gene:2503006840; PFAM: Hsp70 protein.
  
 0.846
Dalk_3615
KEGG: dol:Dole_0070 chaperone protein DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; IMG reference gene:2503009347; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK.
  
 0.846
Dalk_4977
KEGG: nth:Nther_2354 hypothetical protein; IMG reference gene:2503010736.
  
 0.846
Dalk_1951
Putative signal transduction protein with EFhand domain; SMART: Calcium-binding EF-hand-containing protein; KEGG: rle:pRL120065 putative symbiosis-related calsymin; IMG reference gene:2503007668.
    
 0.842
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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