Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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Dalk_1998KEGG: dol:Dole_0542 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; IMG reference gene:2503007715; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau. (706 aa)    
Predicted Functional Partners:
Dalk_1767
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: dol:Dole_1188 DNA polymerase III delta; IMG reference gene:2503007478; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
 
 
 0.986
Dalk_4110
KEGG: pca:Pcar_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; IMG reference gene:2503009856; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit.
 
 
 0.970
Dalk_0275
KEGG: ppd:Ppro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; IMG reference gene:2503005971; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit.
 
 
 0.969
Dalk_0930
KEGG: dol:Dole_1885 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; IMG reference gene:2503006631; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc).
 
 0.957
Dalk_2584
KEGG: dau:Daud_1050 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; IMG reference gene:2503008305; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc).
 
 0.936
Dalk_1497
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: net:Neut_2461 single-strand binding protein; IMG reference gene:2503007207; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
    
 0.914
Dalk_4601
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: net:Neut_2461 single-strand binding protein; IMG reference gene:2503010357; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
    
 0.914
Dalk_2675
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sco:SCO1739 DNA polymerase III, alpha chain; IMG reference gene:2503008398; PFAM: OB-fold nucleic acid binding domain.
  
 0.901
Dalk_4585
TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: pth:PTH_2885 replicative DNA helicase; IMG reference gene:2503010341; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.
 
 0.901
Dalk_0915
KEGG: dol:Dole_0006 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; IMG reference gene:2503006616; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.
 
 0.898
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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