STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1999PFAM: conserved hypothetical protein; KEGG: dol:Dole_0541 hypothetical protein; IMG reference gene:2503007716; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family. (104 aa)    
Predicted Functional Partners:
Dalk_2000
KEGG: sfu:Sfum_2791 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Helix-hairpin-helix DNA-binding class 1; Toprim sub domain protein; IMG reference gene:2503007717; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR.
 
  
 0.988
Dalk_1998
KEGG: dol:Dole_0542 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; IMG reference gene:2503007715; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau.
  
  
 0.846
Dalk_1187
TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sfu:Sfum_1240 preprotein translocase, YajC subunit; IMG reference gene:2503006889; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit.
  
 
  0.729
Dalk_1005
TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dvl:Dvul_0154 flagellar biosynthetic protein FliR; IMG reference gene:2503006706; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR.
    
   0.728
Dalk_2001
PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_0539 hypothetical protein; IMG reference gene:2503007718; PFAM: Uncharacterised protein family (UPF0153).
       0.707
Dalk_4736
PFAM: protein of unknown function DUF150; KEGG: dsy:DSY2521 hypothetical protein; IMG reference gene:2503010493; PFAM: Uncharacterised BCR, YhbC family COG0779.
 
    0.678
Dalk_0784
KEGG: gsu:GSU1132 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; IMG reference gene:2503006485; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY.
 
  
 0.637
Dalk_4650
KEGG: dol:Dole_2310 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; IMG reference gene:2503010406; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein.
 
  
  0.630
Dalk_0024
KEGG: dol:Dole_3206 DNA polymerase III, delta prime subunit; IMG reference gene:2503005719; PFAM: DNA polymerase III, delta subunit, C terminal; TIGRFAM: DNA polymerase III, delta' subunit.
  
  
 0.619
Dalk_3308
TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; IMG reference gene:2503009038; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
   
    0.616
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.