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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2001PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_0539 hypothetical protein; IMG reference gene:2503007718; PFAM: Uncharacterised protein family (UPF0153). (136 aa)    
Predicted Functional Partners:
Dalk_2000
KEGG: sfu:Sfum_2791 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Helix-hairpin-helix DNA-binding class 1; Toprim sub domain protein; IMG reference gene:2503007717; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR.
  
    0.759
Dalk_1999
PFAM: conserved hypothetical protein; KEGG: dol:Dole_0541 hypothetical protein; IMG reference gene:2503007716; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family.
       0.707
Dalk_0099
KEGG: dol:Dole_1538 hypothetical protein; IMG reference gene:2503005794.
  
     0.634
Dalk_4129
KEGG: dol:Dole_1538 hypothetical protein; IMG reference gene:2503009875.
  
     0.630
Dalk_1998
KEGG: dol:Dole_0542 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; IMG reference gene:2503007715; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau.
       0.572
Dalk_1584
PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: amu:Amuc_1565 alpha-2-macroglobulin domain protein; IMG reference gene:2503007294; PFAM: Alpha-macro-globulin thiol-ester bond-forming region; Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region.
  
     0.555
Dalk_2474
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1241 hypothetical protein; IMG reference gene:2503008195; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain.
 
     0.549
Dalk_4306
PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_0105 hypothetical protein; IMG reference gene:2503010054; PFAM: Uncharacterised protein family (UPF0153).
  
     0.545
Dalk_4377
KEGG: dol:Dole_2584 hypothetical protein; IMG reference gene:2503010125.
  
     0.532
Dalk_2289
PFAM: PKD domain containing protein; NHL repeat containing protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mac:MA4315 cell surface protein; IMG reference gene:2503008009; PFAM: NHL repeat; PKD domain.
  
   0.520
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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