Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_2002KEGG: dol:Dole_2023 hypothetical protein; IMG reference gene:2503007719; PFAM: Nickel uptake substrate-specific transmembrane region. (254 aa)    
Predicted Functional Partners:
Dalk_2003
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dol:Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein; IMG reference gene:2503007720; PFAM: Cobalt uptake substrate-specific transmembrane region.
  
 0.988
Dalk_2005
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
  
 0.980
Dalk_2006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1938 ABC transporter related; IMG reference gene:2503007723; PFAM: ABC transporter.
 
  
 0.973
Dalk_2004
KEGG: dol:Dole_2021 hypothetical protein; IMG reference gene:2503007721.
 
  
  0.966
Dalk_2736
KEGG: rpc:RPC_1958 hypothetical protein; IMG reference gene:2503008459; PFAM: Nickel uptake substrate-specific transmembrane region.
  
  
 
0.701
Dalk_2737
KEGG: abu:Abu_1855 hypothetical protein; IMG reference gene:2503008460.
 
     0.671
Dalk_2285
Putative flagellum-related protein; KEGG: ccv:CCV52592_2048 flagellar basal body rod modification protein; IMG reference gene:2503008005.
  
  
 0.630
Dalk_4065
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM_1996 cobalt transport ATP-binding protein; IMG reference gene:2503009810; PFAM: ABC transporter.
    
  0.600
Dalk_0378
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1750 cobalt ABC transporter, ATPase subunit; IMG reference gene:2503006075; PFAM: ABC transporter.
    
 0.583
Dalk_5059
PFAM: ApbE family lipoprotein; KEGG: sfu:Sfum_2693 ApbE family lipoprotein; IMG reference gene:2503010818; PFAM: ApbE family.
  
    0.569
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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