STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2003PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dol:Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein; IMG reference gene:2503007720; PFAM: Cobalt uptake substrate-specific transmembrane region. (200 aa)    
Predicted Functional Partners:
Dalk_2005
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
 0.999
Dalk_2006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1938 ABC transporter related; IMG reference gene:2503007723; PFAM: ABC transporter.
 
 0.998
Dalk_2002
KEGG: dol:Dole_2023 hypothetical protein; IMG reference gene:2503007719; PFAM: Nickel uptake substrate-specific transmembrane region.
  
 0.990
Dalk_0379
PFAM: cobalt transport protein; KEGG: mac:MA4343 cobalt transport family protein; IMG reference gene:2503006076; PFAM: Cobalt transport protein.
  
 0.986
Dalk_4068
PFAM: cobalt transport protein; KEGG: mma:MM_1995 cobalt transport protein; IMG reference gene:2503009813; PFAM: Cobalt transport protein.
  
 0.986
Dalk_2004
KEGG: dol:Dole_2021 hypothetical protein; IMG reference gene:2503007721.
    0.981
Dalk_0378
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1750 cobalt ABC transporter, ATPase subunit; IMG reference gene:2503006075; PFAM: ABC transporter.
  
 0.977
Dalk_2736
KEGG: rpc:RPC_1958 hypothetical protein; IMG reference gene:2503008459; PFAM: Nickel uptake substrate-specific transmembrane region.
  
 0.923
Dalk_0112
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dol:Dole_0969 hypothetical protein; IMG reference gene:2503005807; PFAM: AIR carboxylase.
  
    0.844
Dalk_0449
Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; putative methyltransferase; methyltransferase small; Protein of unknown function methylase putative; IMG reference gene:2503006149; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); Tetrapyrrole (Corrin [...]
  
 
 0.839
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.