Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
Dalk_2003PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dol:Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein; IMG reference gene:2503007720; PFAM: Cobalt uptake substrate-specific transmembrane region. (200 aa)    
Predicted Functional Partners:
Dalk_2005
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
 
 0.996
Dalk_2002
KEGG: dol:Dole_2023 hypothetical protein; IMG reference gene:2503007719; PFAM: Nickel uptake substrate-specific transmembrane region.
  
 0.988
Dalk_2006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1938 ABC transporter related; IMG reference gene:2503007723; PFAM: ABC transporter.
 
 
 0.986
Dalk_2004
KEGG: dol:Dole_2021 hypothetical protein; IMG reference gene:2503007721.
    0.981
Dalk_2736
KEGG: rpc:RPC_1958 hypothetical protein; IMG reference gene:2503008459; PFAM: Nickel uptake substrate-specific transmembrane region.
  
 0.940
Dalk_0379
PFAM: cobalt transport protein; KEGG: mac:MA4343 cobalt transport family protein; IMG reference gene:2503006076; PFAM: Cobalt transport protein.
  
 
 0.925
Dalk_4068
PFAM: cobalt transport protein; KEGG: mma:MM_1995 cobalt transport protein; IMG reference gene:2503009813; PFAM: Cobalt transport protein.
  
 
 0.925
Dalk_1721
With ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; IMG reference gene:2503007431; PFAM: Substrate binding domain of ABC-type glycine betaine transport system.
  
  
  0.852
Dalk_2385
PFAM: ABC-3 protein; KEGG: pcu:pc1807 putative zinc ABC transporter membrane protein; IMG reference gene:2503008105; PFAM: ABC 3 transport family.
  
  
 0.850
Dalk_0378
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1750 cobalt ABC transporter, ATPase subunit; IMG reference gene:2503006075; PFAM: ABC transporter.
  
 
 0.848
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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