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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2004KEGG: dol:Dole_2021 hypothetical protein; IMG reference gene:2503007721. (211 aa)    
Predicted Functional Partners:
Dalk_2002
KEGG: dol:Dole_2023 hypothetical protein; IMG reference gene:2503007719; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
  0.984
Dalk_2003
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dol:Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein; IMG reference gene:2503007720; PFAM: Cobalt uptake substrate-specific transmembrane region.
    0.981
Dalk_2005
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ; IMG reference gene:2503007722; PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ.
 
     0.959
Dalk_2736
KEGG: rpc:RPC_1958 hypothetical protein; IMG reference gene:2503008459; PFAM: Nickel uptake substrate-specific transmembrane region.
 
  
  0.940
Dalk_2006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1938 ABC transporter related; IMG reference gene:2503007723; PFAM: ABC transporter.
 
     0.918
Dalk_4028
SMART: SET-related domain protein; KEGG: bte:BTH_II2089 hypothetical protein; IMG reference gene:2503009773.
    
 0.870
Dalk_2862
Putative sirtuin-type regulators for CoA ligase (histone deacetylase superfamily); PFAM: histone deacetylase superfamily; KEGG: HDA2; HDA2 (histone deacetylase 2); histone deacetylase; IMG reference gene:2503008587; PFAM: Histone deacetylase domain.
    
 0.777
Dalk_3011
Putative sirtuin-type regulators for CoA ligase (histone deacetylase superfamily); PFAM: histone deacetylase superfamily; KEGG: sfu:Sfum_4058 histone deacetylase superfamily; IMG reference gene:2503008738; PFAM: Histone deacetylase domain.
    
 0.777
Dalk_3529
SMART: Tetratricopeptide domain protein; KEGG: mar:MAE_30600 serine/threonine protein kinase; IMG reference gene:2503009261.
  
  
  0.770
Dalk_3963
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mma:MM_2720 hypothetical protein; IMG reference gene:2503009708; PFAM: Tetratricopeptide repeat.
  
  
  0.768
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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