STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2008PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: maq:Maqu_2823 alpha/beta hydrolase domain-containing protein; IMG reference gene:2503007725; PFAM: alpha/beta hydrolase fold. (298 aa)    
Predicted Functional Partners:
Dalk_2270
PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: deh:cbdb_A685 putative [Fe] hydrogenase, HymC subunit; IMG reference gene:2503007990; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
    
 0.960
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.947
Dalk_3709
KEGG: scl:sce2886 hypothetical protein; IMG reference gene:2503009453.
  
 0.946
Dalk_2559
NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dsy:DSY3970 NADH dehydrogenase I chain F; IMG reference gene:2503008280; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain.
  
 0.931
Dalk_1749
KEGG: sat:SYN_01693 acyl carrier protein; IMG reference gene:2503007460; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
   
 0.924
Dalk_3308
TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; IMG reference gene:2503009038; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
   
 0.924
Dalk_2271
Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: sat:SYN_01648 NADH:ubiquinone oxidoreductase, NADH-binding subunit; IMG reference gene:2503007991; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain.
    
  0.923
Dalk_5089
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: det:DET0729 [Fe] hydrogenase, HymB subunit, putative; IMG reference gene:2503010848; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain.
    
  0.923
Dalk_2272
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: det:DET0728 [Fe] hydrogenase, HymA subunit, putative; IMG reference gene:2503007992; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit.
    
  0.922
Dalk_2558
NADH-quinone oxidoreductase, E subunit-like protein (NuoE); PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: chy:CHY_0731 Fe-hydrogenase, gamma subunit; IMG reference gene:2503008279; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit.
    
  0.922
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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