STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2009PFAM: peptidase M48 Ste24p; KEGG: cts:Ctha_1055 STE24 endopeptidase; IMG reference gene:2503007726; PFAM: Peptidase family M48. (413 aa)    
Predicted Functional Partners:
Dalk_0505
KEGG: dol:Dole_1575 hypothetical protein; IMG reference gene:2503006205; PFAM: Dynamin family.
     
 0.906
Dalk_0994
PFAM: protein of unknown function DUF1078 domain protein; KEGG: gsu:GSU3052 flagellar basal-body rod protein FlgG; IMG reference gene:2503006695; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins.
    
   0.728
Dalk_1010
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sat:SYN_02837 flagellar motor switch protein; IMG reference gene:2503006711; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
    
   0.728
Dalk_2010
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sfu:Sfum_4015 hydrogenase expression/formation protein HypE; IMG reference gene:2503007727; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE.
       0.686
Dalk_3468
Hypothetical protein Dalk_3468; KEGG: cts:Ctha_2591 TPR repeat-containing protein; IMG reference gene:2503009200.
  
     0.626
Dalk_4272
KEGG: dol:Dole_3044 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; IMG reference gene:2503010020; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH.
  
 
 0.562
Dalk_4722
PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: leucine-rich repeat transmembrane protein kinase, putative; IMG reference gene:2503010478; PFAM: Leucine Rich Repeat.
  
     0.556
Dalk_2008
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: maq:Maqu_2823 alpha/beta hydrolase domain-containing protein; IMG reference gene:2503007725; PFAM: alpha/beta hydrolase fold.
       0.532
Dalk_4702
TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; IMG reference gene:2503010458; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase.
  
  
 0.525
Dalk_1139
Molecular chaperone GrpE (heat shock protein)-like protein; KEGG: cac:CAC0471 GrpE protein HSP-70 cofactor; IMG reference gene:2503006841; PFAM: GrpE.
  
  
 0.522
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.