STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2012TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: gur:Gura_1950 (NiFe) hydrogenase maturation protein HypF; IMG reference gene:2503007729; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF. (757 aa)    
Predicted Functional Partners:
Dalk_2010
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sfu:Sfum_4015 hydrogenase expression/formation protein HypE; IMG reference gene:2503007727; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE.
 
 
 0.995
Dalk_2011
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dps:DP0579 hydrogenase accessory protein HypD; IMG reference gene:2503007728; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD.
 
  
 0.973
Dalk_2013
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: fre:Franean1_3402 hydrogenase assembly chaperone HypC/HupF; IMG reference gene:2503007730; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF.
 
 
 0.968
Dalk_2278
Hydrogenase maturation protein; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: mka:MK0227 hydrogenase maturation factor; IMG reference gene:2503007998; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF.
 
 
 0.890
Dalk_0386
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dol:Dole_0298 hydrogenase accessory protein HypB; IMG reference gene:2503006083; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB.
 
   
 0.871
Dalk_0387
TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: dol:Dole_1517 hydrogenase nickel insertion protein HypA; IMG reference gene:2503006084; PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA.
 
   
 0.858
Dalk_2281
Regulatory H2-sensing hydrogenase, HupV; PFAM: nickel-dependent hydrogenase large subunit; KEGG: mag:amb1114 Ni,Fe-hydrogenase I large subunit; IMG reference gene:2503008001; PFAM: Nickel-dependent hydrogenase.
 
 
 
 0.738
Dalk_4962
F420-non-reducing hydrogenase, iron-sulfur subunit, MvhA; PFAM: nickel-dependent hydrogenase large subunit; KEGG: sfu:Sfum_1791 hydrogen dehydrogenase; IMG reference gene:2503010721; PFAM: Nickel-dependent hydrogenase.
 
   
 0.675
Dalk_0212
PFAM: acylphosphatase; KEGG: rxy:Rxyl_0794 acylphosphatase; IMG reference gene:2503005908; PFAM: Acylphosphatase.
    
 0.653
Dalk_2276
Periplasmic (NiFe) hydrogenase, large subunit; PFAM: nickel-dependent hydrogenase large subunit; KEGG: sfu:Sfum_2952 nickel-dependent hydrogenase, large subunit; IMG reference gene:2503007996; PFAM: Nickel-dependent hydrogenase.
 
 
 
 0.634
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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