STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
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[Homology]
Score
Dalk_2017Putative TRAP-type C4-dicarboxylate transport system, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_3157 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503007734; PFAM: Bacterial extracellular solute-binding protein, family 7. (349 aa)    
Predicted Functional Partners:
Dalk_0472
TRAP-type C4-dicarboxylate transport system, DctQ subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dvl:Dvul_2953 tripartite ATP-independent periplasmic transporter DctQ; IMG reference gene:2503006172; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 
 0.921
Dalk_2189
TRAP-type C4-dicarboxylate transport system, DctQ subunit -like protein; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dol:Dole_3156 tripartite ATP-independent periplasmic transporter DctQ; IMG reference gene:2503007909; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 
 0.912
Dalk_2187
KEGG: dol:Dole_3154 hypothetical protein; IMG reference gene:2503007907.
 
 
 
 0.909
Dalk_2688
KEGG: dol:Dole_3154 hypothetical protein; IMG reference gene:2503008411.
 
 
 
 0.899
Dalk_2188
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dol:Dole_3155 TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2503007908; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
 0.857
Dalk_0471
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dvl:Dvul_2954 TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2503006171; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
 0.856
Dalk_4430
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dol:Dole_2001 TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2503010181; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
 0.850
Dalk_4428
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_2003 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503010179; PFAM: Bacterial extracellular solute-binding protein, family 7.
  
     0.691
Dalk_2018
PAS/PAC sensor hybrid histidine kinase; KEGG: sat:SYN_00226 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; IMG reference gene:2503007735; PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
    
  0.568
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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