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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2160KEGG: pca:Pcar_0043 hypothetical protein; IMG reference gene:2503007880; PFAM: Uncharacterised protein family (UPF0104). (315 aa)    
Predicted Functional Partners:
Dalk_2161
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pho:PH0819 methyltransferase; IMG reference gene:2503007881; PFAM: Radical SAM superfamily; B12 binding domain.
       0.778
Dalk_2159
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mgm:Mmc1_1633 radical SAM domain protein; IMG reference gene:2503007879; PFAM: Radical SAM superfamily; B12 binding domain.
       0.671
Dalk_2158
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gur:Gura_0504 radical SAM domain-containing protein; IMG reference gene:2503007878; PFAM: Radical SAM superfamily; B12 binding domain.
       0.662
Dalk_1807
PFAM: glycosyl transferase family 2; KEGG: lbf:LBF_4116 bifunctional glycosyltransferase/sugar pyrophosphorylase; IMG reference gene:2503007518; PFAM: Glycosyl transferase family 2.
  
 
 0.523
Dalk_2888
KEGG: dol:Dole_0153 hypothetical protein; IMG reference gene:2503008613.
    
  0.495
Dalk_0796
PFAM: diacylglycerol kinase catalytic region; KEGG: amt:Amet_4787 diacylglycerol kinase, catalytic region; IMG reference gene:2503006497; PFAM: Diacylglycerol kinase catalytic domain; Diacylglycerol kinase accessory domain.
  
 
  0.472
Dalk_4702
TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; IMG reference gene:2503010458; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase.
     
 0.462
Dalk_3153
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dol:Dole_1779 endonuclease/exonuclease/phosphatase; IMG reference gene:2503008882; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
  
 0.450
Dalk_1042
PFAM: glycosyl transferase family 2; KEGG: mma:MM_0652 glycosyltransferase; IMG reference gene:2503006743; PFAM: Glycosyl transferase family 2.
  
 
 0.446
Dalk_3131
KEGG: dol:Dole_2787 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; IMG reference gene:2503008860; PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase.
    
 0.445
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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