close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2178KEGG: dol:Dole_2423 SH3 type 3 domain-containing protein; IMG reference gene:2503007898. (378 aa)    
Predicted Functional Partners:
Dalk_2177
PFAM: peptidase C39 bacteriocin processing; KEGG: lsp:Bsph_4732 minor extracellular protease VpR precursor; IMG reference gene:2503007897; PFAM: Peptidase C39 family.
 
    0.931
Dalk_2179
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dol:Dole_2424 membrane protein involved in aromatic hydrocarbon degradation; IMG reference gene:2503007899; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
 
     0.894
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
    
  0.766
Dalk_4012
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dol:Dole_1570 competence/damage-inducible protein CinA; IMG reference gene:2503009757; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
    
  0.748
Dalk_4630
KEGG: lil:LA0536 hypothetical protein; IMG reference gene:2503010386; PFAM: Protein of unknown function (DUF2804).
  
     0.711
Dalk_0311
KEGG: gme:Gmet_2921 hypothetical protein; IMG reference gene:2503006008; PFAM: Protein of unknown function (DUF3015).
  
     0.634
Dalk_1389
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: dol:Dole_3254 hypothetical protein; IMG reference gene:2503007094; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
  
  0.591
Dalk_0312
KEGG: gbm:Gbem_0538 hypothetical protein; IMG reference gene:2503006009.
  
     0.528
Dalk_2079
KEGG: dol:Dole_3105 hypothetical protein; IMG reference gene:2503007796; PFAM: START domain.
 
     0.474
Dalk_4748
KEGG: dol:Dole_0360 alpha/beta fold family hydrolase; IMG reference gene:2503010505; PFAM: Putative serine esterase (DUF676).
  
     0.474
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.