STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2188TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dol:Dole_3155 TRAP dicarboxylate transporter, DctM subunit; IMG reference gene:2503007908; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit. (435 aa)    
Predicted Functional Partners:
Dalk_2189
TRAP-type C4-dicarboxylate transport system, DctQ subunit -like protein; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dol:Dole_3156 tripartite ATP-independent periplasmic transporter DctQ; IMG reference gene:2503007909; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 0.989
Dalk_0472
TRAP-type C4-dicarboxylate transport system, DctQ subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dvl:Dvul_2953 tripartite ATP-independent periplasmic transporter DctQ; IMG reference gene:2503006172; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 0.986
Dalk_0473
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dvl:Dvul_2952 TRAP dicarboxylate transporter, DctP subunit; IMG reference gene:2503006173; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
 
 0.979
Dalk_3902
Putative TRAP-type C4-dicarboxylate transport system, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_3157 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503009646; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
 0.932
Dalk_4428
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_2003 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503010179; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
 
 0.928
Dalk_2187
KEGG: dol:Dole_3154 hypothetical protein; IMG reference gene:2503007907.
 
   
 0.889
Dalk_0022
Putative TRAP-type C4-dicarboxylate transport system, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_3157 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503005717; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
 
 0.857
Dalk_0197
Putative TRAP-type C4-dicarboxylate transport system, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_3157 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503005892; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
 
 0.857
Dalk_0236
Putative TRAP-type C4-dicarboxylate transport system, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_3157 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503005932; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
 
 0.857
Dalk_0795
Putative TRAP-type C4-dicarboxylate transport system, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dol:Dole_3157 TRAP dicarboxylate transporter-DctP subunit; IMG reference gene:2503006496; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
 0.857
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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