STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2197Putative uncharacterized protein similar to MasE; IMG reference gene:2503007917. (73 aa)    
Predicted Functional Partners:
Dalk_2198
Alkylsuccinate synthase (II), putative gamma subunit (AssC2); KEGG: eba:c2A303 gamma-subunit of benzylsuccinate synthase; IMG reference gene:2503007918; PFAM: BssC/TutF protein.
       0.741
Dalk_2199
Alkylsuccinate synthase (II), alpha subunit (AssA2); PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: eba:c2A304 alpha-subunit of benzylsuccinate synthase; IMG reference gene:2503007919; PFAM: Glycine radical; Pyruvate formate lyase.
       0.483
Dalk_2196
Hypothetical protein; IMG reference gene:2503007916.
       0.438
Dalk_2194
Putative uncharacterized protein (AssF2); KEGG: eba:c2A307 hypothetical protein; IMG reference gene:2503007914.
       0.421
Dalk_2195
Chaperone (AssE2); PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: eba:c2A306 chaperone; IMG reference gene:2503007915; PFAM: AAA domain (dynein-related subfamily); CbbQ/NirQ/NorQ C-terminal.
       0.421
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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