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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2201KEGG: rru:Rru_A0916 pyruvate-formate lyase-activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; IMG reference gene:2503007921; PFAM: Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family. (312 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
  
 
 0.973
Dalk_2199
Alkylsuccinate synthase (II), alpha subunit (AssA2); PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: eba:c2A304 alpha-subunit of benzylsuccinate synthase; IMG reference gene:2503007919; PFAM: Glycine radical; Pyruvate formate lyase.
 
 0.951
Dalk_0164
Pyruvate formate lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cbh:CLC_3093 formate acetyltransferase; IMG reference gene:2503005859; PFAM: Glycine radical; Pyruvate formate lyase.
 
 0.933
Dalk_2579
Pyruvate formate lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: dol:Dole_0906 formate C-acetyltransferase; IMG reference gene:2503008300; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase.
 
 0.933
Dalk_0828
Pyruvate formate lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: dol:Dole_2191 formate C-acetyltransferase; IMG reference gene:2503006529; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase.
 
 0.931
Dalk_1477
Pyruvate formate lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: pca:Pcar_1397 glycerol dehydratase; IMG reference gene:2503007187; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase.
 
 0.931
Dalk_1731
Alkylsuccinate synthase (I), alpha subunit (AssA1); PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: eba:c2A304 alpha-subunit of benzylsuccinate synthase; IMG reference gene:2503007442; PFAM: Glycine radical; Pyruvate formate lyase.
 
 0.931
Dalk_4867
Pyruvate formate lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: dol:Dole_0906 formate C-acetyltransferase; IMG reference gene:2503010625; PFAM: Glycine radical; Pyruvate formate lyase; TIGRFAM: pyruvate formate-lyase.
 
 0.931
Dalk_2202
KEGG: shw:Sputw3181_0426 glycyl-radical enzyme activating protein family; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; IMG reference gene:2503007922; PFAM: 4Fe-4S binding domain; Radical SAM superfamily; TIGRFAM: glycyl-radical enzyme activating protein family.
 
 
0.884
Dalk_3586
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: gka:GK0199 aldehyde dehydrogenase; IMG reference gene:2503009318; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase.
  
 
 0.881
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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