STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2241KEGG: dol:Dole_1342 hypothetical protein; IMG reference gene:2503007961. (181 aa)    
Predicted Functional Partners:
Dalk_2242
Hypothetical protein Dalk_2242; IMG reference gene:2503007962.
       0.682
Dalk_2243
Na+/sulfate symporter (high affinity sodium/sulfate-dependent symporter NadC); PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dol:Dole_1343 sodium/sulphate symporter; IMG reference gene:2503007963; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter.
       0.642
Dalk_2244
PFAM: response regulator receiver; KEGG: dol:Dole_1357 response regulator receiver protein; IMG reference gene:2503007964; PFAM: Response regulator receiver domain.
       0.563
Dalk_2240
PFAM: CBS domain containing protein; response regulator receiver; KEGG: dol:Dole_1341 response regulator receiver protein; IMG reference gene:2503007960; PFAM: CBS domain; Response regulator receiver domain.
       0.531
Dalk_2245
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1349 histidine kinase; IMG reference gene:2503007965; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
       0.409
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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