STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2260KEGG: pca:Pcar_1581 hypothetical protein; IMG reference gene:2503007980; PFAM: Dinitrogenase iron-molybdenum cofactor. (193 aa)    
Predicted Functional Partners:
Dalk_2262
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: pth:PTH_0582 hypothetical protein; IMG reference gene:2503007982; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
     0.861
Dalk_2261
KEGG: sat:SYN_01170 putative cytoplasmic protein; IMG reference gene:2503007981.
 
     0.856
Dalk_2264
Cobyrinic acid ac-diamide synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: glo:Glov_1688 cobyrinic acid ac-diamide synthase; IMG reference gene:2503007984; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
   
 0.845
Dalk_2263
Cobyrinic acid ac-diamide synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: dps:DP0339 hypothetical protein; IMG reference gene:2503007983; PFAM: 4Fe-4S binding domain; CobQ/CobB/MinD/ParA nucleotide binding domain.
 
   
 0.836
Dalk_0725
PFAM: NifH/frxC-family protein; oxidoreductase/nitrogenase component 1; KEGG: dsy:DSY3862 putative nitrogenase subunit NifH; IMG reference gene:2503006426; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase iron protein.
  
  
 0.770
Dalk_2265
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: ppd:Ppro_1950 dinitrogenase iron-molybdenum cofactor biosynthesis; IMG reference gene:2503007985; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
     0.747
Dalk_2259
PAS modulated sigma54 specific transcriptional regulator, Fis family; KEGG: pca:Pcar_1580 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; IMG reference gene:2503007979; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box.
 
     0.703
Dalk_0111
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; KEGG: sat:SYN_01028 LuxR family regulatory protein; IMG reference gene:2503005806; PFAM: Bacterial regulatory proteins, luxR family.
  
     0.594
Dalk_2648
TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sfu:Sfum_2684 Fe-S cluster assembly protein NifU; IMG reference gene:2503008370; PFAM: NifU-like N terminal domain; BFD-like [2Fe-2S] binding domain; NifU-like domain; TIGRFAM: Fe-S cluster assembly protein NifU.
  
  
 0.567
Dalk_1522
Nitrogenase (molybdenum-iron) reductase and maturation protein; Nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; IMG reference gene:2503007232; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein.
  
  
 0.534
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.