STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2286PFAM: WD40 domain protein beta Propeller; KEGG: cpc:Cpar_0640 Tol-Pal system beta propeller repeat protein TolB; IMG reference gene:2503008006; PFAM: WD40-like Beta Propeller Repeat. (310 aa)    
Predicted Functional Partners:
Dalk_3147
PFAM: OmpA/MotB domain protein; KEGG: dol:Dole_2209 peptidoglycan-associated lipoprotein; IMG reference gene:2503008876; PFAM: OmpA family; TIGRFAM: peptidoglycan-associated lipoprotein.
 
 0.868
Dalk_2289
PFAM: PKD domain containing protein; NHL repeat containing protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mac:MA4315 cell surface protein; IMG reference gene:2503008009; PFAM: NHL repeat; PKD domain.
  
   0.795
Dalk_2491
PFAM: OmpA/MotB domain protein; SMART: von Willebrand factor type A; KEGG: sat:SYN_00198 outer membrane porin protein; IMG reference gene:2503008212; PFAM: von Willebrand factor type A domain; OmpA family.
  
 0.781
Dalk_0230
PFAM: OmpA/MotB domain protein; KEGG: sat:SYN_00198 outer membrane porin protein; IMG reference gene:2503005926; PFAM: von Willebrand factor type A domain; OmpA family.
  
 0.778
Dalk_0231
PFAM: protein of unknown function DUF748; KEGG: dar:Daro_1599 hypothetical protein; IMG reference gene:2503005927; PFAM: Domain of Unknown Function (DUF748).
  
 0.778
Dalk_0310
OmpA/MotB domain protein; PFAM: von Willebrand factor type A; OmpA/MotB domain protein; KEGG: sat:SYN_00198 outer membrane porin protein; IMG reference gene:2503006007; PFAM: von Willebrand factor type A domain; OmpA family.
  
 0.778
Dalk_1041
PFAM: OmpA/MotB domain protein; KEGG: dol:Dole_1995 OmpA/MotB domain-containing protein; IMG reference gene:2503006742; PFAM: OmpA family.
  
 0.778
Dalk_3695
PFAM: protein of unknown function DUF400; KEGG: dol:Dole_0036 hypothetical protein; IMG reference gene:2503009439; PFAM: Protein of unknown function, DUF400.
  
 0.778
Dalk_5284
PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: pvi:Cvib_0715 OmpA/MotB domain-containing protein; IMG reference gene:2503011044; PFAM: OmpA family.
  
 0.778
Dalk_0052
Transporter, cation-chloride cotransporter (CCC) family (TC 2.A.30); PFAM: amino acid permease-associated region; KEGG: pin:Ping_1733 amino acid permease-associated region; IMG reference gene:2503005747; PFAM: Amino acid permease.
  
 
 0.730
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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