STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Experiments
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[Homology]
Score
Dalk_2341Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to ammonia and water; IMG reference gene:2503008061; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase. (536 aa)    
Predicted Functional Partners:
Dalk_0681
Bifunctional CO dehydrogenase/acetyl-CoA synthase, beta subunit; In acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex; IMG reference gene:2503006382; PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; TIGRFAM: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit.
   
 0.991
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
 0.891
Dalk_3226
KEGG: dol:Dole_2773 hypothetical protein; IMG reference gene:2503008955; PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit.
   
 0.849
Dalk_2354
Uncharacterized protein with a partial NAD(P)H-nitrite reductase, large subunit domain; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aoe:Clos_2493 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503008074; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.788
Dalk_2339
Putative dissimilatory sulfite reductase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: dol:Dole_0748 proto-chlorophyllide reductase 57 kD subunit; IMG reference gene:2503008059; PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Proto-chlorophyllide reductase 57 kD subunit.
    
 0.754
Dalk_0725
PFAM: NifH/frxC-family protein; oxidoreductase/nitrogenase component 1; KEGG: dsy:DSY3862 putative nitrogenase subunit NifH; IMG reference gene:2503006426; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase iron protein.
     
 0.738
Dalk_5100
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: gsu:GSU1835 glutamine synthetase, type I; IMG reference gene:2503010859; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.
     
 0.736
Dalk_0157
PFAM: molybdopterin binding domain; formylmethanofuran dehydrogenase subunit E region; KEGG: sfu:Sfum_0032 molybdopterin binding domain; IMG reference gene:2503005852; PFAM: Prokaryotic dksA/traR C4-type zinc finger; Probable molybdopterin binding domain; FmdE, Molybdenum formylmethanofuran dehydrogenase operon.
   
 
  0.728
Dalk_2559
NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dsy:DSY3970 NADH dehydrogenase I chain F; IMG reference gene:2503008280; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain.
    
 0.717
Dalk_2338
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2104 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; IMG reference gene:2503008058.
     0.712
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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