STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2371Cytochrome c7 (PpcA); PFAM: cytochrome c class III; KEGG: dol:Dole_2651 cytochrome c class III; IMG reference gene:2503008091; PFAM: Class III cytochrome C family. (119 aa)    
Predicted Functional Partners:
Dalk_2370
Hypothetical protein Dalk_2370; IMG reference gene:2503008090.
       0.705
Dalk_2368
KEGG: sfu:Sfum_1387 hypothetical protein; IMG reference gene:2503008088.
       0.697
Dalk_2369
Hydroxylamine oxidoreductase (HAO); KEGG: sfu:Sfum_2550 hydroxylamine oxidase; IMG reference gene:2503008089.
       0.686
Dalk_2372
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein; IMG reference gene:2503008092; PFAM: Rubredoxin.
       0.610
Dalk_2367
Desulfoferredoxin; TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: sfu:Sfum_3891 desulfoferrodoxin; IMG reference gene:2503008087; PFAM: Desulfoferrodoxin, N-terminal domain; Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain; desulfoferrodoxin; desulfoferrodoxin ferrous iron-binding domain.
       0.502
Dalk_2373
Flavodiiron protein (Rubredoxin-oxygen oxidoreductase); PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dol:Dole_2654 flavodoxin/nitric oxide synthase; IMG reference gene:2503008093; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily.
       0.446
Dalk_2374
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_3217 hypothetical protein; IMG reference gene:2503008094.
       0.446
Dalk_2375
KEGG: sat:SYN_00675 putative cytoplasmic protein; IMG reference gene:2503008095.
       0.441
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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