STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2386TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sfu:Sfum_0594 putative regulatory protein, FmdB family; IMG reference gene:2503008106; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family. (82 aa)    
Predicted Functional Partners:
Dalk_2387
PFAM: nitrogen-fixing NifU domain protein; KEGG: sfu:Sfum_0595 nitrogen-fixing NifU domain protein; IMG reference gene:2503008107; PFAM: NifU-like N terminal domain.
  
    0.786
Dalk_4353
Cytochrome c, class III family protein, Rnf-associated; PFAM: cytochrome c class III; KEGG: tye:THEYE_A1056 chain A, cytochrome c3 from Desulfomicrobium Baculatus; IMG reference gene:2503010101; PFAM: Class III cytochrome C family.
  
     0.662
Dalk_2252
PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dol:Dole_1359 anion transporter; IMG reference gene:2503007972; PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter.
  
     0.632
Dalk_2388
PFAM: major facilitator superfamily MFS_1; KEGG: dol:Dole_1430 major facilitator transporter; IMG reference gene:2503008108; PFAM: Major Facilitator Superfamily.
 
     0.587
Dalk_1085
OhcB2 (protein with transmembrane helices); KEGG: dvu:DVU3143 iron-sulfur cluster-binding protein; IMG reference gene:2503006786.
  
     0.526
Dalk_1544
PFAM: CBS domain containing protein; KEGG: dol:Dole_2123 CBS domain-containing protein; IMG reference gene:2503007254; PFAM: CBS domain.
  
     0.525
Dalk_0281
KEGG: emi:Emin_0901 hypothetical protein; IMG reference gene:2503005978; PFAM: Protein of unknown function (DUF3108).
  
     0.506
Dalk_1626
Putative uncharacterized protein(contains glutamate synthase domain and a partial HdrA domain); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: sfu:Sfum_0014 4Fe-4S ferredoxin, iron-sulfur binding domain protein; IMG reference gene:2503007336; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
  
     0.489
Dalk_2249
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dol:Dole_1356 histidine kinase; IMG reference gene:2503007969; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
     0.487
Dalk_1267
Quinone reductase complex, QrcA; KEGG: dol:Dole_2546 hypothetical protein; IMG reference gene:2503006970; PFAM: Class III cytochrome C family.
  
     0.471
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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