close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2467PFAM: regulatory protein TetR; KEGG: dol:Dole_1920 TetR family transcriptional regulator; IMG reference gene:2503008188; PFAM: Bacterial regulatory proteins, tetR family. (233 aa)    
Predicted Functional Partners:
Dalk_2468
PFAM: aminoglycoside phosphotransferase; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase; IMG reference gene:2503008189; PFAM: Phosphotransferase enzyme family.
 
     0.837
Dalk_2466
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dol:Dole_1921 acyl-CoA dehydrogenase domain-containing protein; IMG reference gene:2503008187; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
 
     0.721
Dalk_2469
PFAM: aminoglycoside phosphotransferase; KEGG: dol:Dole_1459 aminoglycoside phosphotransferase; IMG reference gene:2503008190; PFAM: Phosphotransferase enzyme family.
 
     0.661
Dalk_2465
PFAM: Phosphoglycerate mutase; KEGG: dol:Dole_1922 phosphoglycerate mutase; IMG reference gene:2503008186; PFAM: Phosphoglycerate mutase family.
 
     0.647
Dalk_4845
PFAM: regulatory protein TetR; KEGG: sus:Acid_5697 TetR family transcriptional regulator; IMG reference gene:2503010603; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.584
Dalk_4639
PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YsiA domain protein; KEGG: sfu:Sfum_1401 transcriptional regulator, TetR family; IMG reference gene:2503010395; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family.
  
     0.547
Dalk_0612
PFAM: Abortive infection protein; KEGG: dol:Dole_0971 abortive infection protein; IMG reference gene:2503006313; PFAM: CAAX amino terminal protease family.
  
     0.545
Dalk_4881
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_C7183 TetR family transcriptional regulator; IMG reference gene:2503010639; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.529
Dalk_5043
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_C7183 TetR family transcriptional regulator; IMG reference gene:2503010802; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.522
Dalk_3659
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dol:Dole_0155 3-hydroxyacyl-CoA dehydrogenase NAD-binding; IMG reference gene:2503009403; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
   
 0.496
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.