STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2594KEGG: gur:Gura_2149 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; IMG reference gene:2503008315; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein. (353 aa)    
Predicted Functional Partners:
Dalk_2593
Domain of unknown function DUF1731; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; domain of unknown function DUF1731; KEGG: dol:Dole_1467 NAD-dependent epimerase/dehydratase; IMG reference gene:2503008314; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: TIGR01777 family protein.
       0.762
Dalk_0412
TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sfu:Sfum_0058 diaminopimelate decarboxylase; IMG reference gene:2503006109; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase.
     
 0.737
Dalk_0896
KEGG: rfr:Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; IMG reference gene:2503006597; PFAM: CheB methylesterase; CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box.
   
   0.699
Dalk_5101
MCP methyltransferase/methylesterase CheR/CheB with PAS/PAC sensor; KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR-type; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; PAS fold domain protein; SMART: PAS domain containing protein; IMG reference gene:2503010860; PFAM: CheB methylesterase; CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box.
   
   0.699
Dalk_0657
PFAM: MCP methyltransferase CheR-type; KEGG: sat:SYN_00970 chemotaxis protein methyltransferase; IMG reference gene:2503006358; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.694
Dalk_1591
PFAM: MCP methyltransferase CheR-type; KEGG: sat:SYN_00970 chemotaxis protein methyltransferase; IMG reference gene:2503007301; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.694
Dalk_3181
PFAM: MCP methyltransferase CheR-type; KEGG: dps:DP2645 chemotaxis protein methyltransferase CheR; IMG reference gene:2503008910; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.694
Dalk_3925
PFAM: MCP methyltransferase CheR-type; KEGG: pca:Pcar_1199 methylase of chemotaxis methyl-accepting protein, CheR-like; IMG reference gene:2503009669; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.694
Dalk_4487
PFAM: MCP methyltransferase CheR-type; KEGG: bra:BRADO1825 chemotaxis protein methyltransferase; IMG reference gene:2503010238; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.694
Dalk_4669
KEGG: gme:Gmet_2707 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; IMG reference gene:2503010425; PFAM: CheR methyltransferase, SAM binding domain; Tetratricopeptide repeat.
    
   0.694
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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