Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_2602PFAM: protein of unknown function DUF111; KEGG: dol:Dole_2215 hypothetical protein; IMG reference gene:2503008323; PFAM: Protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein. (390 aa)    
Predicted Functional Partners:
Dalk_2473
PFAM: ExsB family protein; PP-loop domain protein; KEGG: chy:CHY_1281 hypothetical protein; IMG reference gene:2503008194; PFAM: Asparagine synthase; TIGRFAM: TIGR00268 family protein.
  
 0.988
Dalk_0112
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: dol:Dole_0969 hypothetical protein; IMG reference gene:2503005807; PFAM: AIR carboxylase.
 
  
 0.938
Dalk_2603
TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: dol:Dole_2216 peptidase T-like protein; IMG reference gene:2503008324; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T-like protein.
       0.820
Dalk_0804
CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; IMG reference gene:2503006505; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase.
 
      0.660
Dalk_2003
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dol:Dole_2022 cobalamin (vitamin B12) biosynthesis CbiM protein; IMG reference gene:2503007720; PFAM: Cobalt uptake substrate-specific transmembrane region.
  
    0.609
Dalk_1327
PFAM: protein of unknown function DUF362; KEGG: mma:MM_1795 iron-sulfur cluster-binding protein; IMG reference gene:2503007031; PFAM: Domain of unknown function (DUF362).
 
     0.538
Dalk_4626
Protein of unknown function DUF362; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein; IMG reference gene:2503010382; PFAM: Domain of unknown function (DUF362).
 
     0.484
Dalk_2896
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mma:MM_2547 putative ferredoxin; IMG reference gene:2503008621.
  
    0.468
Dalk_1152
Protein of unknown function DUF362; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: cth:Cthe_1172 hypothetical protein; IMG reference gene:2503006854; PFAM: Domain of unknown function (DUF362).
 
     0.467
Dalk_3511
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mma:MM_2563 ferredoxin; IMG reference gene:2503009243; PFAM: 4Fe-4S binding domain; Domain of unknown function (DUF362).
 
    0.466
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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