STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2634Conserved hypothetical protein; KEGG: dol:Dole_0964 putative radical SAM protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; IMG reference gene:2503008356; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family. (310 aa)    
Predicted Functional Partners:
Dalk_2635
GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; IMG reference gene:2503008357; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A.
 
     0.674
Dalk_2636
PAS modulated sigma54 specific transcriptional regulator, Fis family; KEGG: pca:Pcar_2365 two component signal transduction response regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; IMG reference gene:2503008358; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PAS f [...]
       0.526
Dalk_4205
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dde:Dde_3702 transcriptional regulator, AraC type; IMG reference gene:2503009952; PFAM: Bacterial transcription activator, effector binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
   
    0.502
Dalk_3139
TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pca:Pcar_2210 predicted S-adenosylmethionine-dependent methyltransferase; IMG reference gene:2503008868; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW.
  
    0.404
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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