STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2657Propionyl-CoA carboxylase, beta subunit; PFAM: carboxyl transferase; KEGG: pho:PH1287 methylmalonyl-CoA decarboxylase alpha chain; IMG reference gene:2503008379; PFAM: Carboxyl transferase domain. (516 aa)    
Predicted Functional Partners:
Dalk_2550
TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: dsy:DSY2366 biotin carboxylase; IMG reference gene:2503008271; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxy [...]
 
 0.995
Dalk_3024
Pyruvate carboxylase, biotin carboxylase subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: sat:SYN_01041 pyruvate carboxylase biotin carboxylase subunit; IMG reference gene:2503008751; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain.
 
 0.995
Dalk_3896
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: abo:ABO_0844 pyruvate carboxylase subunit B; IMG reference gene:2503009640; PFAM: Biotin-requiring enzyme.
  
 0.961
Dalk_0376
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: dol:Dole_0391 biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2503006073; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region.
 
 
 0.899
Dalk_2659
Propionyl-CoA carboxylase, biotin-binding subunit; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: mxa:MXAN_5768 acetyl-CoA carboxylase, biotin carboxyl carrier protein; IMG reference gene:2503008381; PFAM: Biotin-requiring enzyme.
  
 
 0.897
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
  
 
 0.882
Dalk_3782
Pyruvate carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: dol:Dole_0075 hypothetical protein; IMG reference gene:2503009526; PFAM: HMGL-like; Conserved carboxylase domain; Biotin-requiring enzyme.
  
 
 0.858
Dalk_1323
Phosphoenolpyruvate phosphomutase; TIGRFAM: cytidyltransferase-related domain protein; phosphoenolpyruvate phosphomutase; PFAM: cytidylyltransferase; KEGG: azo:azo2698 putative phosphoenolpyruvate phosphomutase; IMG reference gene:2503007027; PFAM: Cytidylyltransferase; TIGRFAM: phosphoenolpyruvate phosphomutase; cytidyltransferase-related domain.
  
 0.846
Dalk_3192
PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; Sterol-binding domain protein; KR domain protein; KEGG: dol:Dole_1549 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008921; PFAM: MaoC like domain; short chain dehydrogenase; SCP-2 sterol transfer family.
  
 
 0.808
Dalk_3779
Putative methylmalonyl-CoA racemase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dol:Dole_0080 glyoxalase/bleomycin resistance protein/dioxygenase; IMG reference gene:2503009523; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.
 
 
 0.790
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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