STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2672Hypothetical protein Dalk_2672; IMG reference gene:2503008395. (531 aa)    
Predicted Functional Partners:
Dalk_2673
Hypothetical protein Dalk_2673; IMG reference gene:2503008396.
       0.504
Dalk_2674
KEGG: cth:Cthe_0773 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; IMG reference gene:2503008397; PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA.
       0.497
Dalk_2675
PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sco:SCO1739 DNA polymerase III, alpha chain; IMG reference gene:2503008398; PFAM: OB-fold nucleic acid binding domain.
       0.497
Dalk_2671
Hypothetical protein Dalk_2671; IMG reference gene:2503008394.
       0.422
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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