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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2675PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sco:SCO1739 DNA polymerase III, alpha chain; IMG reference gene:2503008398; PFAM: OB-fold nucleic acid binding domain. (108 aa)    
Predicted Functional Partners:
Dalk_1767
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: dol:Dole_1188 DNA polymerase III delta; IMG reference gene:2503007478; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
  
 0.981
Dalk_0024
KEGG: dol:Dole_3206 DNA polymerase III, delta prime subunit; IMG reference gene:2503005719; PFAM: DNA polymerase III, delta subunit, C terminal; TIGRFAM: DNA polymerase III, delta' subunit.
   
 0.966
Dalk_1998
KEGG: dol:Dole_0542 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; IMG reference gene:2503007715; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau.
   
 0.966
Dalk_0275
KEGG: ppd:Ppro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; IMG reference gene:2503005971; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit.
    
 0.965
Dalk_4110
KEGG: pca:Pcar_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; IMG reference gene:2503009856; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit.
    
 0.965
Dalk_1497
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: net:Neut_2461 single-strand binding protein; IMG reference gene:2503007207; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
   
 0.952
Dalk_4601
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: net:Neut_2461 single-strand binding protein; IMG reference gene:2503010357; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
   
 0.952
Dalk_2674
KEGG: cth:Cthe_0773 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; IMG reference gene:2503008397; PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA.
    
 0.951
Dalk_2902
DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; KEGG: pca:Pcar_3129 damage-inducible protein DinP; IMG reference gene:2503008628; PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family.
  
 
 0.894
Dalk_2673
Hypothetical protein Dalk_2673; IMG reference gene:2503008396.
       0.762
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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