STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2724PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: msm:MSMEG_3527 putative HTH-type transcriptional regulator; IMG reference gene:2503008447; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (238 aa)    
Predicted Functional Partners:
Dalk_0021
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mta:Moth_1312 GntR family transcriptional regulator; IMG reference gene:2503005716; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
    0.702
Dalk_2725
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dol:Dole_2754 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008448; PFAM: short chain dehydrogenase.
       0.668
Dalk_4913
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mta:Moth_1312 GntR family transcriptional regulator; IMG reference gene:2503010671; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
    0.659
Dalk_3958
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: bxe:Bxe_A4083 transcriptional regulator, GntR family; IMG reference gene:2503009703; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
    0.632
Dalk_3486
TIGRFAM: cytidyltransferase-related domain protein; KEGG: npu:Npun_F0631 ATPase/kinase involved in NAD metabolism; IMG reference gene:2503009218; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type; cytidyltransferase-related domain.
  
    0.570
Dalk_2985
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ent:Ent638_0458 regulatory protein, IclR; IMG reference gene:2503008712; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator.
 
  
 0.557
Dalk_2726
KEGG: dol:Dole_0992 hypothetical protein; IMG reference gene:2503008449.
       0.556
Dalk_2723
PFAM: response regulator receiver; KEGG: sfu:Sfum_3519 putative PAS/PAC sensor protein; IMG reference gene:2503008446; PFAM: Response regulator receiver domain.
       0.509
Dalk_5140
PFAM: L-lactate permease; KEGG: dps:DP1023 hypothetical protein; IMG reference gene:2503010899; PFAM: L-lactate permease; TIGRFAM: L-lactate transport.
  
  
 0.497
Dalk_3943
PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: tdn:Suden_1327 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; IMG reference gene:2503009687; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
    
 0.447
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.