STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2813PFAM: isochorismatase hydrolase; KEGG: sat:SYN_02574 isochorismatase superfamily hydrolase; IMG reference gene:2503008537; PFAM: Isochorismatase family. (177 aa)    
Predicted Functional Partners:
Dalk_0954
KEGG: dde:Dde_1379 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; IMG reference gene:2503006655; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase.
      0.889
Dalk_0685
Hydroxyethylthiazole kinase; Catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; IMG reference gene:2503006386; PFAM: Hydroxyethylthiazole kinase family; TIGRFAM: hydroxyethylthiazole kinase.
    
 0.883
Dalk_2816
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dol:Dole_2823 short chain dehydrogenase; IMG reference gene:2503008540; PFAM: short chain dehydrogenase.
    
 0.842
Dalk_2812
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_0985 glycosyl transferase family protein; IMG reference gene:2503008536; PFAM: Glycosyl transferase family 2.
       0.773
Dalk_4188
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: syp:SYNPCC7002_A2513 N-methylhydantoinase A; 5-oxoprolinase; IMG reference gene:2503009935; PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region.
    
  0.767
Dalk_2815
PFAM: protein of unknown function DUF72; KEGG: tye:THEYE_A1271 DUF72; IMG reference gene:2503008539; PFAM: Protein of unknown function DUF72.
  
 
 0.757
Dalk_3638
PFAM: ribonuclease II; KEGG: dol:Dole_0448 exoribonuclease II; IMG reference gene:2503009382; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases.
    
  0.741
Dalk_2814
TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sfu:Sfum_0940 phosphohistidine phosphatase, SixA; IMG reference gene:2503008538; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA.
       0.720
Dalk_1404
TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: sat:SYN_02398 isochorismate synthase; IMG reference gene:2503007109; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases.
     
 0.690
Dalk_3328
TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dol:Dole_0775 carbohydrate kinase, YjeF related protein; IMG reference gene:2503009058; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region.
  
    0.588
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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