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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2825KEGG: rec:RHECIAT_CH0000301 hypothetical protein; IMG reference gene:2503008549. (123 aa)    
Predicted Functional Partners:
Dalk_1951
Putative signal transduction protein with EFhand domain; SMART: Calcium-binding EF-hand-containing protein; KEGG: rle:pRL120065 putative symbiosis-related calsymin; IMG reference gene:2503007668.
   
 0.837
Dalk_1916
PFAM: ribosomal protein S10; KEGG: dol:Dole_0707 ribosomal protein S10; IMG reference gene:2503007628; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle.
  
 
 0.832
Dalk_2862
Putative sirtuin-type regulators for CoA ligase (histone deacetylase superfamily); PFAM: histone deacetylase superfamily; KEGG: HDA2; HDA2 (histone deacetylase 2); histone deacetylase; IMG reference gene:2503008587; PFAM: Histone deacetylase domain.
    
  0.814
Dalk_3011
Putative sirtuin-type regulators for CoA ligase (histone deacetylase superfamily); PFAM: histone deacetylase superfamily; KEGG: sfu:Sfum_4058 histone deacetylase superfamily; IMG reference gene:2503008738; PFAM: Histone deacetylase domain.
    
  0.814
Dalk_1905
TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dol:Dole_0718 ribosomal protein L14; IMG reference gene:2503007617; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle.
   
   0.778
Dalk_1903
PFAM: ribosomal protein L5; KEGG: sfu:Sfum_1567 50S ribosomal protein L5; IMG reference gene:2503007615; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5.
  
 
 0.738
Dalk_1911
TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: lip:LI0964 30S ribosomal protein S19; IMG reference gene:2503007623; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle.
  
   0.726
Dalk_1046
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_4031 ABC transporter related; IMG reference gene:2503006747; PFAM: ABC transporter transmembrane region; ABC transporter.
 
 0.706
Dalk_2346
PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: sus:Acid_7272 beta-lactamase domain-containing protein; IMG reference gene:2503008066; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
    
 0.706
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
  
   0.698
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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