Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_2829PFAM: protein of unknown function DUF255; KEGG: mac:MA3726 hypothetical protein; IMG reference gene:2503008553; PFAM: Protein of unknown function, DUF255. (718 aa)    
Predicted Functional Partners:
Dalk_3757
Translation initiation factor, aIF-2BI family; KEGG: dol:Dole_1306 eIF-2B alpha/beta/delta-related protein; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; IMG reference gene:2503009501; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase.
   
   0.582
Dalk_0071
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: afw:Anae109_1571 hypothetical protein; IMG reference gene:2503005766; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
    
   0.570
Dalk_0073
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: ttj:TTHB180 hypothetical protein; IMG reference gene:2503005768; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
    
   0.570
Dalk_0080
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF1566; KEGG: sus:Acid_3175 hypothetical protein; IMG reference gene:2503005775; PFAM: Beta-propeller repeat; Protein of unknown function (DUF1566); Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
    
   0.570
Dalk_0547
PFAM: PKD domain containing protein; Cadherin; Fibronectin type III domain protein; KEGG: rba:RB886 hypothetical protein; IMG reference gene:2503006247; PFAM: Fibronectin type III domain; Cadherin domain.
    
   0.570
Dalk_0590
PFAM: Thrombospondin type 3 repeat; KEGG: cja:CJA_1292 cartilage oligomeric matrix protein; IMG reference gene:2503006291.
    
   0.570
Dalk_1213
TIGRFAM: conserved repeat domain protein; PFAM: legume lectin beta domain; protein of unknown function DUF11; KEGG: syp:SYNPCC7002_A2175 hypothetical protein; IMG reference gene:2503006916; PFAM: Legume lectin domain; Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
    
   0.570
Dalk_1386
TIGRFAM: conserved repeat domain protein; KEGG: eli:ELI_06185 hypothetical protein; IMG reference gene:2503007091; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
    
   0.570
Dalk_1389
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: dol:Dole_3254 hypothetical protein; IMG reference gene:2503007094; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
    
   0.570
Dalk_1843
PFAM: FG-GAP repeat protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: gvi:glr0892 hypothetical protein; IMG reference gene:2503007555; PFAM: FG-GAP repeat.
    
   0.570
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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