STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2850PFAM: protein of unknown function UPF0153; KEGG: dol:Dole_1894 hypothetical protein; IMG reference gene:2503008575; PFAM: Uncharacterised protein family (UPF0153). (213 aa)    
Predicted Functional Partners:
Dalk_2851
Hypothetical protein Dalk_2851; IMG reference gene:2503008576.
       0.773
Dalk_2852
KEGG: sun:SUN_1455 hypothetical protein; IMG reference gene:2503008577.
       0.757
Dalk_4129
KEGG: dol:Dole_1538 hypothetical protein; IMG reference gene:2503009875.
  
     0.721
Dalk_4299
Dissimilatory sulfite reductase complex, associated protein DsrD; PFAM: Dissimilatory sulfite reductase D; KEGG: dvl:Dvul_2530 dissimilatory sulfite reductase B; IMG reference gene:2503010047; PFAM: Dissimilatory sulfite reductase D (DsrD).
  
     0.511
Dalk_2289
PFAM: PKD domain containing protein; NHL repeat containing protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: mac:MA4315 cell surface protein; IMG reference gene:2503008009; PFAM: NHL repeat; PKD domain.
  
   0.495
Dalk_1016
Flagellar basal body rod modification protein; PFAM: flagellar hook capping protein; KEGG: ade:Adeh_1388 flagellar hook capping protein; IMG reference gene:2503006717; PFAM: Flagellar hook capping protein.
   
   0.481
Dalk_0099
KEGG: dol:Dole_1538 hypothetical protein; IMG reference gene:2503005794.
 
     0.479
Dalk_4353
Cytochrome c, class III family protein, Rnf-associated; PFAM: cytochrome c class III; KEGG: tye:THEYE_A1056 chain A, cytochrome c3 from Desulfomicrobium Baculatus; IMG reference gene:2503010101; PFAM: Class III cytochrome C family.
  
     0.479
Dalk_2375
KEGG: sat:SYN_00675 putative cytoplasmic protein; IMG reference gene:2503008095.
  
     0.471
Dalk_1639
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dau:Daud_2195 putative regulatory protein, FmdB family; IMG reference gene:2503007349; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family.
  
     0.441
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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