STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2873KEGG: dol:Dole_1007 hypothetical protein; IMG reference gene:2503008598; PFAM: Methylene-tetrahydrofolate reductase C terminal. (244 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
 0.924
Dalk_0215
Dihydropyrimidine dehydrogenase (NADP(+)); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; Fe-S cluster domain protein; KEGG: dol:Dole_2825 electron transport complex, RnfABCDGE type, B subunit; IMG reference gene:2503005911; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain.
  
 0.922
Dalk_2596
TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_2511 electron transport complex, RnfABCDGE type, B subunit; IMG reference gene:2503008317; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit.
  
 0.922
Dalk_4355
PFAM: NQR2 and RnfD family protein; KEGG: dol:Dole_2829 electron transport complex, RnfABCDGE type, D subunit; IMG reference gene:2503010103; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit.
  
 
 0.890
Dalk_2539
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rci:RCIX1916 2(4Fe-4S) ferredoxin-domain-containing protein; IMG reference gene:2503008260.
  
 0.882
Dalk_4356
TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dol:Dole_2828 electron transport complex, RnfABCDGE type, G subunit; IMG reference gene:2503010104; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit.
  
 
 0.878
Dalk_3263
PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_1151 methylenetetrahydrofolate reductase; IMG reference gene:2503008993; PFAM: Methylenetetrahydrofolate reductase.
 
 
 0.857
Dalk_0681
Bifunctional CO dehydrogenase/acetyl-CoA synthase, beta subunit; In acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex; IMG reference gene:2503006382; PFAM: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; TIGRFAM: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit.
 
  
 0.855
Dalk_2779
PFAM: methylenetetrahydrofolate reductase; KEGG: dol:Dole_0458 methylenetetrahydrofolate reductase; IMG reference gene:2503008502; PFAM: Methylenetetrahydrofolate reductase.
 
 
 0.854
Dalk_2561
PFAM: methylenetetrahydrofolate reductase; KEGG: amt:Amet_2022 methylenetetrahydrofolate reductase; IMG reference gene:2503008282; PFAM: Methylenetetrahydrofolate reductase.
 
 
 0.852
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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