STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2889PFAM: histone family protein DNA-binding protein; KEGG: sat:SYN_01228 DNA-binding protein HU; IMG reference gene:2503008614; PFAM: Bacterial DNA-binding protein. (89 aa)    
Predicted Functional Partners:
Dalk_0002
TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; KEGG: dol:Dole_0001 chromosomal replication initiator protein DnaA; IMG reference gene:2503005697; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA.
  
 
 0.919
Dalk_0121
PFAM: histone family protein DNA-binding protein; KEGG: sfu:Sfum_0002 histone family protein DNA-binding protein; IMG reference gene:2503005816; PFAM: Bacterial DNA-binding protein.
  
0.880
Dalk_1655
PFAM: histone family protein DNA-binding protein; KEGG: dol:Dole_1031 histone family protein DNA-binding protein; IMG reference gene:2503007365; PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, alpha subunit.
  
0.880
Dalk_0023
PFAM: histone family protein DNA-binding protein; KEGG: dol:Dole_3207 histone family protein DNA-binding protein; IMG reference gene:2503005718; PFAM: Bacterial DNA-binding protein.
 
0.802
Dalk_0915
KEGG: dol:Dole_0006 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; IMG reference gene:2503006616; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.
  
 
 0.773
Dalk_4585
TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: pth:PTH_2885 replicative DNA helicase; IMG reference gene:2503010341; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase.
  
 
 0.773
Dalk_2109
PFAM: TOPRIM domain protein; DNA primase catalytic core domain; KEGG: shw:Sputw3181_2207 phage / plasmid primase, P4 family; IMG reference gene:2503007829; PFAM: DNA primase catalytic core, N-terminal domain.
    
 0.762
Dalk_3077
DNA primase; KEGG: dol:Dole_2153 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; IMG reference gene:2503008806; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core.
    
 0.762
Dalk_2841
KEGG: dol:Dole_0025 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; IMG reference gene:2503008566; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'.
    
  0.756
Dalk_5243
KEGG: hit:NTHI0102 replicative DNA helicase; IMG reference gene:2503011003; PFAM: DnaB-like helicase C terminal domain.
  
 
 0.755
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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