STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2958PFAM: protein of unknown function DUF28; KEGG: dol:Dole_0371 hypothetical protein; IMG reference gene:2503008685; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family. (247 aa)    
Predicted Functional Partners:
Dalk_2756
TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dol:Dole_0670 aspartyl-tRNA synthetase; IMG reference gene:2503008479; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type.
  
 0.881
Dalk_2957
PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; Methyltransferase type 11; KEGG: dol:Dole_0372 ribosomal RNA methyltransferase RrmJ/FtsJ; IMG reference gene:2503008684; PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ.
  
    0.833
Dalk_0026
Methionyl-tRNA synthetase; methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; IMG reference gene:2503005721; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta [...]
  
   0.796
Dalk_3621
KEGG: dol:Dole_0609 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; IMG reference gene:2503009364; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase.
 
 
 0.794
Dalk_4644
PFAM: ribosomal protein L19; KEGG: sat:SYN_00770 50S ribosomal protein L19; IMG reference gene:2503010400; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type.
  
   0.770
Dalk_1010
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sat:SYN_02837 flagellar motor switch protein; IMG reference gene:2503006711; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
   
   0.736
Dalk_2956
DNA repair protein RadA; Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; IMG reference gene:2503008683; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA.
  
    0.701
Dalk_1457
TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: dol:Dole_2692 trigger factor; IMG reference gene:2503007164; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor.
  
  
 0.643
Dalk_2633
NAD+ synthetase; KEGG: aba:Acid345_2524 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; IMG reference gene:2503008355; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase.
   
   0.625
Dalk_3305
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; IMG reference gene:2503009035; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32.
  
  
 0.625
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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