STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2970PFAM: nitroreductase; KEGG: dol:Dole_2168 nitroreductase; IMG reference gene:2503008697; PFAM: Nitroreductase family. (225 aa)    
Predicted Functional Partners:
Dalk_4009
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dol:Dole_3062 uroporphyrin-III C-methyltransferase; IMG reference gene:2503009754; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase.
  
 
 0.752
Dalk_3830
PFAM: nitroreductase; KEGG: dol:Dole_0039 nitroreductase; IMG reference gene:2503009574; PFAM: Nitroreductase family.
 
     0.741
Dalk_0376
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; KEGG: dol:Dole_0391 biotin--acetyl-CoA-carboxylase ligase; IMG reference gene:2503006073; PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: BirA biotin operon repressor domain; birA, biotin-[acetyl-CoA-carboxylase] ligase region.
  
    0.628
Dalk_0909
Acyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: abo:ABO_1529 CaiB/BaiF family protein; IMG reference gene:2503006610; PFAM: CoA-transferase family III.
  
 
  0.586
Dalk_2474
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_1241 hypothetical protein; IMG reference gene:2503008195; PFAM: YcaO-like family; Tetratricopeptide repeat; TIGRFAM: uncharacterized domain.
  
  
 0.563
Dalk_1202
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfu:Sfum_1140 glyoxalase/bleomycin resistance protein/dioxygenase; IMG reference gene:2503006905; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
  
 0.558
Dalk_0245
PFAM: protein of unknown function DUF1330; KEGG: rpd:RPD_0120 hypothetical protein; IMG reference gene:2503005941; PFAM: Protein of unknown function (DUF1330).
  
     0.552
Dalk_2971
PFAM: helix-turn-helix HxlR type; KEGG: cbe:Cbei_2242 transcriptional regulator, HxlR family; IMG reference gene:2503008698; PFAM: HxlR-like helix-turn-helix.
       0.538
Dalk_4016
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sat:SYN_00396 putative cytoplasmic protein; IMG reference gene:2503009761; PFAM: Antibiotic biosynthesis monooxygenase.
 
 
  0.500
Dalk_3779
Putative methylmalonyl-CoA racemase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dol:Dole_0080 glyoxalase/bleomycin resistance protein/dioxygenase; IMG reference gene:2503009523; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.
  
  
 0.490
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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