STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2979KEGG: rba:RB10033 hypothetical protein; IMG reference gene:2503008706. (237 aa)    
Predicted Functional Partners:
Dalk_1794
KEGG: dol:Dole_2837 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; IMG reference gene:2503007505; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase.
    
 0.712
Dalk_1789
TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: dol:Dole_2842 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; IMG reference gene:2503007500; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
     
 0.661
Dalk_2980
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rci:RRC396 indolepyruvate oxidoreductase subunit B; IMG reference gene:2503008707; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit.
       0.554
Dalk_2981
Indolepyruvate ferredoxin oxidoreductase, alpha/partial beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: pho:PH0765 indolepyruvate ferredoxin oxidoreductase alpha subunit; IMG reference gene:2503008708; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit.
       0.554
Dalk_2982
Putative coenzyme F420 hydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: mtp:Mthe_0174 coenzyme F420 hydrogenase/dehydrogenase beta subunit; IMG reference gene:2503008709; PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus.
       0.533
Dalk_2978
PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1323 glycosyl transferase family protein; IMG reference gene:2503008705; PFAM: Glycosyl transferase family 2.
     
 0.505
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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