STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_2997KEGG: mgm:Mmc1_2665 hypothetical protein; IMG reference gene:2503008724. (122 aa)    
Predicted Functional Partners:
Dalk_2996
PFAM: IS66 Orf2 family protein; KEGG: mta:Moth_2338 IS66 Orf2 like; IMG reference gene:2503008723; PFAM: IS66 Orf2 like protein.
       0.778
Dalk_2998
Putative AMP-dependent Co-A ligase/synthetase; PFAM: AMP-dependent synthetase and ligase; KEGG: dol:Dole_1204 AMP-dependent synthetase and ligase; IMG reference gene:2503008725; PFAM: AMP-binding enzyme.
       0.565
Dalk_2994
PFAM: IS66 Orf2 family protein; KEGG: mta:Moth_2338 IS66 Orf2 like; IMG reference gene:2503008721; PFAM: IS66 Orf2 like protein.
       0.449
Dalk_2995
KEGG: mgm:Mmc1_2665 hypothetical protein; IMG reference gene:2503008722.
      
0.439
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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