STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_3003Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dol:Dole_1876 heavy metal translocating P-type ATPase; IMG reference gene:2503008730; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protei [...] (812 aa)    
Predicted Functional Partners:
Dalk_3004
PFAM: Heavy metal transport/detoxification protein; KEGG: dol:Dole_1877 heavy metal transport/detoxification protein; IMG reference gene:2503008731; PFAM: Heavy-metal-associated domain.
  
 
 0.992
Dalk_4242
TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: dol:Dole_0550 chaperonin GroEL; IMG reference gene:2503009989; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL.
    
 0.860
Dalk_2586
PFAM: protein of unknown function DUF156; KEGG: pca:Pcar_0892 hypothetical protein; IMG reference gene:2503008307; PFAM: Uncharacterised BCR, COG1937.
  
  
 0.848
Dalk_3001
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dde:Dde_1463 mercuric reductase, putative; IMG reference gene:2503008728; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
     
 0.834
Dalk_4702
TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: pca:Pcar_2611 peptide methionine sulfoxide reductase; IMG reference gene:2503010458; PFAM: SelR domain; Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; methionine-R-sulfoxide reductase.
 
  
 0.800
Dalk_2587
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mgm:Mmc1_3400 cation diffusion facilitator family transporter; IMG reference gene:2503008308; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter.
  
  
 0.786
Dalk_3679
PFAM: regulatory protein ArsR; KEGG: swo:Swol_2087 transcriptional regulator; IMG reference gene:2503009423; PFAM: Bacterial regulatory protein, arsR family.
 
  
 0.750
Dalk_3002
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein; IMG reference gene:2503008729; PFAM: SNARE associated Golgi protein.
  
  
 0.740
Dalk_3626
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; IMG reference gene:2503009370; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit.
    
 0.736
Dalk_0297
PAS/PAC sensor hybrid histidine kinase; KEGG: sfu:Sfum_3740 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; IMG reference gene:2503005994; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
    
 0.727
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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