STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dalk_3045Putative enoyl- (acyl-carrier protein) reductase II; PFAM: 2-nitropropane dioxygenase NPD; KEGG: lin:lin0810 hypothetical protein; IMG reference gene:2503008772; PFAM: 2-nitropropane dioxygenase. (297 aa)    
Predicted Functional Partners:
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.867
Dalk_3044
PFAM: regulatory protein TetR; KEGG: bac:BamMC406_5288 transcriptional regulator, TetR family; IMG reference gene:2503008771; PFAM: Bacterial regulatory proteins, tetR family.
    
  0.790
Dalk_3043
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_2064 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; IMG reference gene:2503008770; PFAM: 4Fe-4S binding domain.
       0.773
Dalk_1055
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: sen:SACE_0023 beta-ketoacyl synthase; IMG reference gene:2503006756; PFAM: Acyl transferase domain; FabA-like domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: PfaB family protein.
  
 
 0.753
Dalk_3309
3-Oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: tye:THEYE_A0103 beta-ketoacyl-acyl carrier protein synthase II; IMG reference gene:2503009039; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II.
  
 
 0.752
Dalk_3191
PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; Sterol-binding domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KR domain protein; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008920; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; DUF35 OB-fold domain; short chain dehydrogenase; SCP-2 sterol transfer family.
  
 
 0.745
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
    
  0.741
Dalk_3308
TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; IMG reference gene:2503009038; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
  
 0.705
Dalk_1750
3-Oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase; KEGG: sat:SYN_01694 3-oxoacyl-[acyl-carrier-protein] synthase; IMG reference gene:2503007461; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
  
 
 0.695
Dalk_1749
KEGG: sat:SYN_01693 acyl carrier protein; IMG reference gene:2503007460; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
  
 0.694
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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